CPM 2011: Palermo, Italy
Invited Talks.
- Gad M. Landau:
Algorithms on Grammar-Compressed Strings. 1
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- Nello Cristianini:
Automatic Discovery of Patterns in Media Content. 2-13
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- Martin Vingron:
Implicit Hitting Set Problems and Multi-genome Alignment. 14
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Proceedings.
- Enno Ohlebusch, Simon Gog:
Lempel-Ziv Factorization Revisited. 15-26
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- Chris Thachuk:
Succincter Text Indexing with Wildcards. 27-40
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- Sebastian Kreft, Gonzalo Navarro:
Self-indexing Based on LZ77. 41-54
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- Haitao Jiang, Farong Zhong, Binhai Zhu:
Filling Scaffolds with Gene Repetitions: Maximizing the Number of Adjacencies. 55-64
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- David E. Daykin, Jacqueline W. Daykin, William F. Smyth:
String Comparison and Lyndon-Like Factorization Using V-Order in Linear Time. 65-76
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- Antoine Deza, Frantisek Franek, Mei Jiang:
A d-Step Approach for Distinct Squares in Strings. 77-89
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- Cedric Chauve, Jan Manuch, Murray Patterson, Roland Wittler:
Tractability Results for the Consecutive-Ones Property with Multiplicity. 90-103
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- Stefanie Schirmer, Robert Giegerich:
Forest Alignment with Affine Gaps and Anchors. 104-117
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- Wolfgang Otto, Peter F. Stadler, Sonja J. Prohaska:
Phylogenetic Footprinting and Consistent Sets of Local Aligments. 118-131
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- Michel Habib, Juraj Stacho:
Unique Perfect Phylogeny Is NP-Hard. 132-146
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- Daniel Gregory Brown, Jakub Truszkowski:
Fast Error-Tolerant Quartet Phylogeny Algorithms. 147-161
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- Dany Breslauer, Zvi Galil:
Real-Time Streaming String-Matching. 162-172
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- Dany Breslauer, Roberto Grossi, Filippo Mignosi:
Simple Real-Time Constant-Space String Matching. 173-183
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- Raphael Clifford, Markus Jalsenius, Ely Porat, Benjamin Sach:
Space Lower Bounds for Online Pattern Matching. 184-196
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- Travis Gagie, Juha Karkkainen:
Counting Colours in Compressed Strings. 197-207
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- German Tischler:
On Wavelet Tree Construction. 208-218
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- Markus J. Bauer, Anthony J. Cox, Giovanna Rosone:
Lightweight BWT Construction for Very Large String Collections. 219-231
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- Tomohiro I, Shunsuke Inenaga, Masayuki Takeda:
Palindrome Pattern Matching. 232-245
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- Takashi Uemura, Hiroki Arimura:
Sparse and Truncated Suffix Trees on Variable-Length Codes. 246-260
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- Paolo Ferragina:
On the Weak Prefix-Search Problem. 261-272
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- Isaac Goldstein, Moshe Lewenstein:
Quick Greedy Computation for Minimum Common String Partitions. 273-284
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- Jeremy Barbay, Johannes Fischer, Gonzalo Navarro:
LRM-Trees: Compressed Indices, Adaptive Sorting, and Compressed Permutations. 285-298
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- Philip Bille, Inge Li Gortz:
Substring Range Reporting. 299-308
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- Takanori Yamamoto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda:
Faster Subsequence and Don't-Care Pattern Matching on Compressed Texts. 309-322
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- Yassin Refahi, Etienne Farcot, Yann Guédon, Fabrice Besnard, Teva Vernoux, Christophe Godin:
A Combinatorial Model of Phyllotaxis Perturbations in Arabidopsis thaliana. 323-335
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- Laurent Bulteau, Guillaume Fertin, Minghui Jiang, Irena Rusu:
Tractability and Approximability of Maximal Strip Recovery. 336-349
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- Michalis Christou, Maxime Crochemore, Costas S. Iliopoulos, Marcin Kubica, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Bartosz Szreder, Tomasz Walen:
Efficient Seeds Computation Revisited. 350-363
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- Domenico Cantone, Salvatore Cristofaro, Simone Faro:
Efficient Matching of Biological Sequences Allowing for Non-overlapping Inversions. 364-375
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- Jesper Nielsen:
A Coarse-to-Fine Approach to Computing the k-Best Viterbi Paths. 376-387
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- Riccardo Dondi, Guillaume Fertin, Stephane Vialette:
Finding Approximate and Constrained Motifs in Graphs. 388-401
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- Kouichi Hirata, Yoshiyuki Yamamoto, Tetsuji Kuboyama:
Improved MAX SNP-Hard Results for Finding an Edit Distance between Unordered Trees. 402-415
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- Michael Elberfeld, Danny Segev, Colin R. Davidson, Dana Silverbush, Roded Sharan:
Approximation Algorithms for Orienting Mixed Graphs. 416-428
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- Stephane Gosselin, Guillaume Damiand, Christine Solnon:
Frequent Submap Discovery. 429-440
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- Tamar Pinhas, Dekel Tsur, Shay Zakov, Michal Ziv-Ukelson:
Edit Distance with Duplications and Contractions Revisited. 441-454
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- Marek Cygan, Marcin Kubica, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Polynomial-Time Approximation Algorithms for Weighted LCS Problem. 455-466
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- Raphael Clifford, Zvi Gotthilf, Moshe Lewenstein, Alexandru Popa:
Restricted Common Superstring and Restricted Common Supersequence. 467-478
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